-----------------------------------------------------------------------------
- Banjo                        Bayesian Network Inference with Java Objects -
- Release 2.2.0                                                 15 Apr 2008 -
- Licensed from Duke University                                             -
- Copyright (c) 2005-08 by Alexander J. Hartemink                           -
- All rights reserved                                                       -
-----------------------------------------------------------------------------
- Project:                                                               20.4
- User:                                                              lsand039
- Dataset:                                  20-vars-377-temporal-observations
- Notes:                                    static bayesian network inference
-----------------------------------------------------------------------------
- Settings file:                                                             
-----------------------------------------------------------------------------
- Input directory:                                 data/release2.0/runA/input
- Observations file:                                                   20.txt
- Observation count:                                                      377
- Number of variables:                                                     21
- Variables are in rows:                                                  yes
- Variable names:                                                      inFile
- Discretization policy:                                                   i7
- Exceptions to the discretization policy:                               none
-----------------------------------------------------------------------------
- Initial structure file:                                                    
- 'Must be present' edges file:                                              
- 'Must not be present' edges file:                                          
- Min. Markov lag:                                                          0
- Max. Markov lag:                                                          0
- Max. parent count:                                                        5
- Equivalent sample size for Dirichlet parameter prior:                   1.0
-----------------------------------------------------------------------------
- Searcher:                                                 SearcherSimAnneal
- Proposer:                                           ProposerRandomLocalMove
- Evaluator:                                        defaulted to EvaluatorBDe
- Decider:                                     defaulted to DeciderMetropolis
-----------------------------------------------------------------------------
- Pre-compute logGamma:                                                    no
- Cache:                                                           fastLevel1
- Cycle checking method:                                   Depth-first Search
-----------------------------------------------------------------------------
- Initial temperature:                                                  25000
- Cooling factor:                                                         0.7
- Reannealing temperature:                                                800
- Max. accepted networks before cooling:                                  250
- Max. proposed networks before cooling:                                25000
- Min. accepted networks before reannealing:                              250
-----------------------------------------------------------------------------
- Output directory:                               data/release2.0/runA/output
- Report file:                      20.4static.report.2016.09.01.20.11.29.txt
- Number of best networks tracked:                                          1
- Max. time:                                                            4.0 h
- Max. restarts:                                                        25000
- Min. networks before checking:                                          250
- Screen reporting interval:                                           10.0 m
- File reporting interval:                                             2.05 h
-----------------------------------------------------------------------------
- Compute influence scores:                                               yes
- Compute consensus graph:                                                yes
- Create consensus graph as HTML:                                         yes
- Create 'dot' output:                                                    yes
- Location of 'dot':  /usr/bin/dot /usr/bin/X11/dot /usr/share/man/man1/dot.1.gz
-----------------------------------------------------------------------------
- XML output directory:                           data/release2.0/runA/output
- XML Report file:                                                           
- XML settings to export:                                                    
- XML parser:                             org.apache.xerces.parsers.SAXParser
- Banjo XML format version:                                               1.0
-----------------------------------------------------------------------------
- Seed for starting search:                                     1472775089005
-----------------------------------------------------------------------------
- Number of threads:                                                        1
-----------------------------------------------------------------------------

Memory info before starting the search: Banjo is using 1 mb of memory
Prep. time used: 580.0 ms
Beginning to search: expect a status report every 10.0 m

Status:  Networks   82006000
         Time       10.0 m (4.1% of max. 4.0 h)
         Re-anneals  1 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   150894000
         Time       20.0 m (8.3% of max. 4.0 h)
         Re-anneals  1 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   217462000
         Time       30.0 m (12.5% of max. 4.0 h)
         Re-anneals  1 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   284632000
         Time       40.0 m (16.6% of max. 4.0 h)
         Re-anneals  1 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   350415500
         Time       50.0 m (20.8% of max. 4.0 h)
         Re-anneals  1 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   416441750
         Time       1.0 h (25.0% of max. 4.0 h)
         Re-anneals  1 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   481648750
         Time       1.17 h (29.1% of max. 4.0 h)
         Re-anneals  1 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   547742000
         Time       1.33 h (33.3% of max. 4.0 h)
         Re-anneals  1 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   618802000
         Time       1.5 h (37.5% of max. 4.0 h)
         Re-anneals  1 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   689121000
         Time       1.67 h (41.6% of max. 4.0 h)
         Re-anneals  1 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   759500000
         Time       1.83 h (45.8% of max. 4.0 h)
         Re-anneals  1 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   830085000
         Time       2.0 h (50.0% of max. 4.0 h)
         Re-anneals  1 (0.0% of max. 25000)
         Banjo is using 5 mb of memory


-----------------------------------------------------------------------------
- Intermediate report                                     Best network so far
-----------------------------------------------------------------------------

Network score: -3271.9304, first found at iteration 1139717
21
 0 2 2 7
 1 2 4 12
 2 2 13 17
 3 2 13 16
 4 2 11 18
 5 2 0 13
 6 2 12 14
 7 2 3 20
 8 2 0 13
 9 2 0 12
10 2 4 13
11 0
12 2 3 20
13 2 11 17
14 2 10 13
15 2 13 17
16 2 2 11
17 1 11
18 2 3 13
19 2 3 13
20 2 3 13

-----------------------------------------------------------------------------


Status:  Networks   901389000
         Time       2.17 h (54.1% of max. 4.0 h)
         Re-anneals  1 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   973234750
         Time       2.33 h (58.3% of max. 4.0 h)
         Re-anneals  1 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   1045747250
         Time       2.5 h (62.5% of max. 4.0 h)
         Re-anneals  1 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   1117674000
         Time       2.67 h (66.6% of max. 4.0 h)
         Re-anneals  1 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   1189987500
         Time       2.83 h (70.8% of max. 4.0 h)
         Re-anneals  1 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   1261867000
         Time       3.0 h (75.0% of max. 4.0 h)
         Re-anneals  1 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   1333681500
         Time       3.17 h (79.1% of max. 4.0 h)
         Re-anneals  1 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   1404247000
         Time       3.33 h (83.3% of max. 4.0 h)
         Re-anneals  1 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   1474378750
         Time       3.5 h (87.5% of max. 4.0 h)
         Re-anneals  1 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   1544455250
         Time       3.67 h (91.6% of max. 4.0 h)
         Re-anneals  1 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   1614473500
         Time       3.83 h (95.8% of max. 4.0 h)
         Re-anneals  1 (0.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   1685200000
         Time       4.0 h (100.0% of max. 4.0 h)
         Re-anneals  1 (0.0% of max. 25000)
         Banjo is using 5 mb of memory



-----------------------------------------------------------------------------
- Final report                                           Best network overall
-----------------------------------------------------------------------------


Network score: -3271.9304, first found at iteration 1139717
21
 0 2 2 7
 1 2 4 12
 2 2 13 17
 3 2 13 16
 4 2 11 18
 5 2 0 13
 6 2 12 14
 7 2 3 20
 8 2 0 13
 9 2 0 12
10 2 4 13
11 0
12 2 3 20
13 2 11 17
14 2 10 13
15 2 13 17
16 2 2 11
17 1 11
18 2 3 13
19 2 3 13
20 2 3 13


-----------------------------------------------------------------------------
- Search Statistics                                                          
-----------------------------------------------------------------------------

Statistics collected in searcher 'SearcherSimAnneal':
  Number of networks examined: 1685200000
  Total time used: 4.0 h
  High score: -3271.9304, first found at iteration 1139717
  Number of re-anneals: 1

Statistics collected in proposer 'ProposerRandomLocalMove':
  Additions -- proposed:    561720820
  Deletions -- proposed:    561721118
  Reversals -- proposed:    561758061

Statistics collected in cycle checker 'CycleCheckerCheckThenApply':
  Additions -- considered:  561720820,  acyclic:  357989086
  Deletions -- no cyclicity test necessary
  Reversals -- considered:  561758061,  acyclic:  338485777

Statistics collected in evaluator 'EvaluatorBDe':
  Scores computed:          459530157
  Scores (cache)            placed         fetched        
      with 0 parents:       21             28814856       
      with 1 parents:       420            885794027      
      with 2 parents:       16390443       896715         
      with 3 parents:       443138011      221646270      
      with 4 parents:       1151           168            
      with 5 parents:       111            27             

Statistics collected in decider 'DeciderMetropolis':
  Additions -- considered:  357989086,  better score:  4023,  other accepted:  1633
  Deletions -- considered:  561721118,  better score:  1664,  other accepted:  3953
  Reversals -- considered:  338485777,  better score:  25922894,  other accepted:  8693
  Average permissivity:     0.0

Memory info after completing the search: Banjo is using 5 mb of memory


Network score: -3271.9304, found by thread 1
21
 0 2 2 7
 1 2 4 12
 2 2 13 17
 3 2 13 16
 4 2 11 18
 5 2 0 13
 6 2 12 14
 7 2 3 20
 8 2 0 13
 9 2 0 12
10 2 4 13
11 0
12 2 3 20
13 2 11 17
14 2 10 13
15 2 13 17
16 2 2 11
17 1 11
18 2 3 13
19 2 3 13
20 2 3 13

-----------------------------------------------------------------------------
- Post-processing                                            Influence scores
-----------------------------------------------------------------------------

Influence score for   (7,0) ->   (0,0)   .0000
Influence score for   (2,0) ->   (0,0)   .6458
Influence score for  (12,0) ->   (1,0)   -.3331
Influence score for   (4,0) ->   (1,0)   .2881
Influence score for  (17,0) ->   (2,0)   .3726
Influence score for  (13,0) ->   (2,0)   .3307
Influence score for  (16,0) ->   (3,0)   .1644
Influence score for  (13,0) ->   (3,0)   .0000
Influence score for  (18,0) ->   (4,0)   -.3164
Influence score for  (11,0) ->   (4,0)   -.3331
Influence score for  (13,0) ->   (5,0)   .0000
Influence score for   (0,0) ->   (5,0)   .4245
Influence score for  (14,0) ->   (6,0)   .2430
Influence score for  (12,0) ->   (6,0)   .0000
Influence score for  (20,0) ->   (7,0)   .0000
Influence score for   (3,0) ->   (7,0)   .0000
Influence score for  (13,0) ->   (8,0)   .0000
Influence score for   (0,0) ->   (8,0)   -.0670
Influence score for  (12,0) ->   (9,0)   .0000
Influence score for   (0,0) ->   (9,0)   .2409
Influence score for  (13,0) ->  (10,0)   .1972
Influence score for   (4,0) ->  (10,0)   -.0465
Influence score for  (20,0) ->  (12,0)   .3144
Influence score for   (3,0) ->  (12,0)   .0000
Influence score for  (17,0) ->  (13,0)   .0000
Influence score for  (11,0) ->  (13,0)   .0000
Influence score for  (13,0) ->  (14,0)   .3307
Influence score for  (10,0) ->  (14,0)   .3307
Influence score for  (17,0) ->  (15,0)   .3307
Influence score for  (13,0) ->  (15,0)   .3307
Influence score for  (11,0) ->  (16,0)   .4271
Influence score for   (2,0) ->  (16,0)   .0000
Influence score for  (11,0) ->  (17,0)   .5832
Influence score for  (13,0) ->  (18,0)   .0000
Influence score for   (3,0) ->  (18,0)   .0741
Influence score for  (13,0) ->  (19,0)   .3307
Influence score for   (3,0) ->  (19,0)   .3307
Influence score for  (13,0) ->  (20,0)   .3307
Influence score for   (3,0) ->  (20,0)   .2937

-----------------------------------------------------------------------------
- Post-processing                                  DOT graphics format output
-----------------------------------------------------------------------------

digraph abstract { 

label = "Banjo Version 2.2.0\nHigh scoring network, score: -3271.9304\nProject: 20.4\nUser: lsand039\nDataset: 20-vars-377-temporal-observations"; 
labeljust="l"; 

    0 [label="Alzheimer"];
    1 [label="GNG4"];
    2 [label="THBS1"];
    3 [label="SIX6"];
    4 [label="GRIK1"];
    5 [label="WWC1"];
    6 [label="KIR2DS3"];
    7 [label="CEACAM6"];
    8 [label="NDUFA7"];
    9 [label="TLR8"];
    10 [label="FAIM3"];
    11 [label="MDFIC"];
    12 [label="GH1"];
    13 [label="REG1B"];
    14 [label="NTRK1"];
    15 [label="PDZD3"];
    16 [label="EDN1"];
    17 [label="ERGIC3"];
    18 [label="S100A2"];
    19 [label="HS3ST1"];
    20 [label="OR12D3"];

    2->0;
    7->0;
    4->1;
    12->1;
    13->2;
    17->2;
    13->3;
    16->3;
    11->4;
    18->4;
    0->5;
    13->5;
    12->6;
    14->6;
    3->7;
    20->7;
    0->8;
    13->8;
    0->9;
    12->9;
    4->10;
    13->10;
    3->12;
    20->12;
    11->13;
    17->13;
    10->14;
    13->14;
    13->15;
    17->15;
    2->16;
    11->16;
    11->17;
    3->18;
    13->18;
    3->19;
    13->19;
    3->20;
    13->20;
}

